Publication datasets

Acacia

Data and empirical models from the manuscript: "Shining a light on dark sequencing: characterising errors in Ion Torrent PGM data"

Ion Torrent Flow-Value Empirical models
Empirical Counts for 100bp, One Touch 314
Empirical Counts for 100bp, One Touch 316
Empirical Counts for 200bp, Manual 314
Empirical Counts for 200bp, Manual 316
Empirical Counts for 200bp, One Touch 314
Empirical Counts for 200bp, One Touch 316

SFF Files (B. amyloliquefaciens and S. tokodaii)

Ion Torrent Flow Models for newly benchmarked datasets

  • Using Ion OneTouch ™ 200 Template Kit v2 DL was used for template prep and Ion PGM™ 200 Sequencing Kit, organism: S. tokodaii (derived from 2 runs)
    IonOneTouch200Template_IonPGM200_316.csv

  • Using Ion OneTouch ™ 200 Template Kit v2 DL was used for template prep and Ion PGM™ 300 Sequencing Kit, organism: B. amyloliquefaciens (derived from a single run)
    IonOneTouch200Template_IonPGM300_316.csv

CheckM

Genomes analyzed in the CheckM manuscript (submitted to Genome Research):


InvACEstigators