Found 166 results
Filters: Author is Hugenholtz, Philip  [Clear All Filters]
2017
Mukherjee S, Seshadri R, Varghese NJ, Eloe-Fadrosh EA, Meier-Kolthoff JP, Göker M, R Coates C, Hadjithomas M, Pavlopoulos GA, Paez-Espino D et al..  2017.  1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life. Nature Biotechnology. 35(7):676-683.
Varelias A, Ormerod KL, Bunting MD, Koyama M, Gartlan KH, Kuns RD, Lachner N, Locke KR, Lim CY, Henden AS et al..  2017.  Acute graft-versus-host disease is regulated by an IL-17-sensitive microbiome. Blood.
Pedroso MMonteiro, Selleck C, Enculescu C, Harmer JR, Mitić N, Craig WR, Helweh W, Hugenholtz P, Tyson GW, Tierney DL et al..  2017.  Characterization of a highly efficient antibiotic-degrading metallo-β-lactamase obtained from an uncultured member of a permafrost community. Metallomics. 9(8):1157-1168.
Hugenholtz P, Waite DW, Vanwonterghem I, Rinke C, Parks DH, Zhang Y, Takai K, Sievert SM, Simon J, Campbell BJ et al..  2017.  Comparative Genomic Analysis of the Class Epsilonproteobacteria and Proposed Reclassification to Epsilonbacteraeota (phyl. nov.). Frontiers in Microbiology. 8
Yeoh YKit, Dennis PG, Paungfoo-Lonhienne C, Weber L, Brackin R, Ragan MA, Schmidt S, Hugenholtz P.  2017.  Evolutionary conservation of a core root microbiome across plant phyla along a tropical soil chronosequence. Nature Communications. 8(1)
Chotirmall SH, Gellatly SL, Budden KF, Aogáin MMac, Shukla SD, Wood DLA, Hugenholtz P, Pethe K, Hansbro PM.  2017.  Microbiomes in respiratory health and disease: An Asia-Pacific perspective. Respirology. 22(2):240-250.
Lambert BS, Raina J-B, Fernandez VI, Rinke C, Siboni N, Rubino F, Hugenholtz P, Tyson GW, Seymour JR, Stocker R.  2017.  A microfluidics-based in situ chemotaxis assay to study the behaviour of aquatic microbial communities. Nature Microbiology.
Bowers RM, Kyrpides NC, Stepanauskas R, Harmon-Smith M, Doud D, Reddy TBK, Schulz F, Jarett J, Rivers AR, Eloe-Fadrosh EA et al..  2017.  Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea. Nature Biotechnology. 35(8):725-731.
Bowers RM, Kyrpides NC, Stepanauskas R, Harmon-Smith M, Doud D, Reddy TBK, Schulz F, Jarett J, Rivers AR, Eloe-Fadrosh EA et al..  2017.  Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea. Nature Biotechnology. 35(8):725-731.
Soo RM, Hemp J, Parks DH, Fischer WW, Hugenholtz P.  2017.  On the origins of oxygenic photosynthesis and aerobic respiration in Cyanobacteria. Science. 355(6332):1436-1440.
2016
Simpson JL, Daly JN, Baines KJ, Yang IA, Upham JW, Reynolds PN, Hodge S, James AL, Hugenholtz P, Willner D et al..  2016.  Airway dysbiosis: Haemophilus influenzae and Tropheryma in poorly controlled asthma. European Respiratory Journal. 47(3):792-800.
Leong LEX, Denman SE, Hugenholtz P, McSweeney CS.  2016.  Amino Acid and Peptide Utilization Profiles of the Fluoroacetate-Degrading Bacterium Synergistetes Strain MFA1 Under Varying Conditions. Microbial Ecology. 71(2):494-504.
Haroon MF, Thompson LR, Parks DH, Hugenholtz P, Stingl U.  2016.  A catalogue of 136 microbial draft genomes from Red Sea metagenomes. Scientific Data. 3:160050.
Yeoh YKit, Sekiguchi Y, Parks DH, Hugenholtz P.  2016.  Comparative Genomics of Candidate Phylum TM6 Suggests That Parasitism Is Widespread and Ancestral in This Lineage. Molecular Biology and Evolution. 33(4):915-927.
Yeoh YKit, Paungfoo-Lonhienne C, Dennis PG, Robinson N, Ragan MA, Schmidt S, Hugenholtz P.  2016.  The core root microbiome of sugarcanes cultivated under varying nitrogen fertilizer application. Environmental Microbiology. 18(5):1338-1351.
Paungfoo-Lonhienne C, Lonhienne TGA, Yeoh YKit, Donose BC, Webb RI, Parsons J, Liao W, Sagulenko E, Lakshmanan P, Hugenholtz P et al..  2016.  Crosstalk between sugarcane and a plant-growth promoting Burkholderia species. Scientific Reports. 6(1)
Budden KF, Gellatly SL, Wood DLA, Cooper MA, Morrison M, Hugenholtz P, Hansbro PM.  2016.  Emerging pathogenic links between microbiota and the gut–lung axis. Nature Reviews Microbiology. 15(1):55-63.
Hugenholtz P, Skarshewski A, Parks DH.  2016.  Genome-Based Microbial Taxonomy Coming of Age. Cold Spring Harbor Perspectives in Biology.
Ormerod KL, Wood DLA, Lachner N, Gellatly SL, Daly JN, Parsons JD, Dal’Molin CGO, Palfreyman RW, Nielsen LK, Cooper MA et al..  2016.  Genomic characterization of the uncultured Bacteroidales family S24-7 inhabiting the guts of homeothermic animals. Microbiome. 4(1)
Singer E, Bushnell B, Coleman-Derr D, Bowman B, Bowers RM, Levy A, Gies EA, Cheng J-F, Copeland A, Klenk H-P et al..  2016.  High-resolution phylogenetic microbial community profiling. The ISME Journal. 10(8):2020-2032.
Bissett A, Fitzgerald A, Meintjes T, Mele PM, Reith F, Dennis PG, Breed MF, Brown B, Brown MV, Brugger J et al..  2016.  Introducing BASE: the Biomes of Australian Soil Environments soil microbial diversity database. GigaScience. 5(1)
Vavourakis CD, Ghai R, Rodriguez-Valera F, Sorokin DY, Tringe SG, Hugenholtz P, Muyzer G.  2016.  Metagenomic Insights into the Uncultured Diversity and Physiology of Microbes in Four Hypersaline Soda Lake Brines. Frontiers in Microbiology. 7
Vanwonterghem I, Evans PN, Parks DH, Jensen PD, Woodcroft B.J., Hugenholtz P, Tyson GW.  2016.  Methylotrophic methanogenesis discovered in the archaeal phylum Verstraetearchaeota. Nature Microbiology. 1:16170.
Rahman NAbdul, Parks DH, Vanwonterghem I, Morrison M, Tyson GW, Hugenholtz P.  2016.  A Phylogenomic Analysis of the Bacterial Phylum Fibrobacteres. Frontiers in Microbiology. 6
Rinke C, Low S, Woodcroft B.J., Raina J-B, Skarshewski A, Le XH, Butler MK, Stocker R, Seymour J, Tyson GW et al..  2016.  Validation of picogram- and femtogram-input DNA libraries for microscale metagenomics. PeerJ. 4:e2486.

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