TitleSTAMP: statistical analysis of taxonomic and functional profiles.
Publication TypeJournal Article
Year of Publication2014
AuthorsParks DH, Tyson GW, Hugenholtz P, Beiko RG
JournalBioinformatics (Oxford, England)
Date Published2014 Jul 23
ISSN1367-4811
AbstractSTAMP is a graphical software package that provides statistical hypothesis tests and exploratory plots for analysing taxonomic and functional profiles. It supports tests for comparing pairs of samples or samples organized into two or more treatment groups. Effect sizes and confidence intervals are provided to allow critical assessment of the biological relevancy of test results. A user-friendly graphical interface permits easy exploration of statistical results and generation of publication-quality plots. Availability and implementation: STAMP is licensed under the GNU GPL. Python source code and binaries are available from our website at: http://kiwi.cs.dal.ca/Software/STAMP CONTACT: donovan.parks@gmail.com Supplementary information: Supplementary data are available at Bioinformatics online.

Address

Australian Centre for Ecogenomics
Level 5, Molecular Biosciences Bldg
University of Queensland
ST LUCIA QLD 4072
Brisbane, Australia

Stay connected

Copyright

© 2010-2018 Australian Centre for Ecogenomics