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2017
Zaugg J, Gumulya Y, Malde AK, Bodén M.  2017.  Learning epistatic interactions from sequence-activity data to predict enantioselectivity. Journal of Computer-Aided Molecular Design. 31(12):1085–1096.
Skennerton CT, Chourey K, Iyer R, Hettich RL, Tyson GW, Orphan VJ.  2017.  Methane-Fueled Syntrophy through Extracellular Electron Transfer: Uncovering the Genomic Traits Conserved within Diverse Bacterial Partners of Anaerobic Methanotrophic Archaea. mBio. 8(4):e00530-17.
Webster NS, Reusch TBH.  2017.  Microbial contributions to the persistence of coral reefs. The ISME Journal. 11(10):2167-2174.
Glasl B, Webster NS, Bourne DG.  2017.  Microbial indicators as a diagnostic tool for assessing water quality and climate stress in coral reef ecosystems. Marine Biology. 164(4)
Luter HM, Bannister RJ, Whalan S, Kutti T, Pineda M-C, Webster NS.  2017.  Microbiome analysis of a disease affecting the deep-sea sponge Geodia barretti. FEMS Microbiology Ecology. 93(6)
Chotirmall SH, Gellatly SL, Budden KF, Aogáin MMac, Shukla SD, Wood DLA, Hugenholtz P, Pethe K, Hansbro PM.  2017.  Microbiomes in respiratory health and disease: An Asia-Pacific perspective. Respirology. 22(2):240-250.
Lambert BS, Raina J-B, Fernandez VI, Rinke C, Siboni N, Rubino F, Hugenholtz P, Tyson GW, Seymour JR, Stocker R.  2017.  A microfluidics-based in situ chemotaxis assay to study the behaviour of aquatic microbial communities. Nature Microbiology.
Bowers RM, Kyrpides NC, Stepanauskas R, Harmon-Smith M, Doud D, Reddy TBK, Schulz F, Jarett J, Rivers AR, Eloe-Fadrosh EA et al..  2017.  Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea. Nature Biotechnology. 35(8):725-731.
Soo RM, Hemp J, Parks DH, Fischer WW, Hugenholtz P.  2017.  On the origins of oxygenic photosynthesis and aerobic respiration in Cyanobacteria. Science. 355(6332):1436-1440.
Moitinho-Silva L, Steinert G, Nielsen S, Hardoim CCP, Wu Y-C, McCormack GP, Lopez-Legentil S, Marchant R, Webster NS, Thomas T et al..  2017.  Predicting the HMA-LMA Status in Marine Sponges by Machine Learning. Frontiers in Microbiology. 8
Parks DH, Rinke C, Chuvochina M, Chaumeil P-A, Woodcroft B.J., Evans PN, Hugenholtz P, Tyson GW.  2017.  Recovery of nearly 8,000 metagenome-assembled genomes substantially expands the tree of life. Nature Microbiology.
Tout J, Astudillo-García C, Taylor MW, Tyson GW, Stocker R, Ralph PJ, Seymour JR, Webster NS.  2017.  Redefining the sponge-symbiont acquisition paradigm: sponge microbes exhibit chemotaxis towards host-derived compounds. Environmental Microbiology Reports. 9(6):750-755.
Strand R., Whalan S., Webster NS, Kutti T., Fang J.KH, Luter H.M, Bannister R.J.  2017.  The response of a boreal deep-sea sponge holobiont to acute thermal stress. Scientific Reports. 7(1)
Strehlow BW, Pineda M-C, Duckworth A, Kendrick GA, Renton M, Wahab MAzmi Abdul, Webster NS, Clode PL.  2017.  Sediment tolerance mechanisms identified in sponges using advanced imaging techniques. PeerJ. 5:e3904.
Moitinho-Silva L, Nielsen S, Amir A, Gonzalez A, Ackermann GL, Cerrano C, Astudillo-García C, Easson C, Sipkema D, Liu F et al..  2017.  The sponge microbiome project. GigaScience. 6(10):1-7.
Orphan V, Tyson GW, Meile C, McGlynn S, Yu H, Chadwick G, Marlow J, Trembath-Reichert E, Dekas A, Hettich R et al..  2017.  Systems Level Dissection of Anaerobic Methane Cycling: Quantitative Measurements of Single Cell Ecophysiology, Genetic Mechanisms, and Microbial Interactions.
2016
Simpson JL, Daly JN, Baines KJ, Yang IA, Upham JW, Reynolds PN, Hodge S, James AL, Hugenholtz P, Willner D et al..  2016.  Airway dysbiosis: Haemophilus influenzae and Tropheryma in poorly controlled asthma. European Respiratory Journal. 47(3):792-800.
Leong LEX, Denman SE, Hugenholtz P, McSweeney CS.  2016.  Amino Acid and Peptide Utilization Profiles of the Fluoroacetate-Degrading Bacterium Synergistetes Strain MFA1 Under Varying Conditions. Microbial Ecology. 71(2):494-504.
Dennis PG, Virdis B, Vanwonterghem I, Hassan A, Hugenholtz P, Tyson GW, Rabaey K.  2016.  Anode potential influences the structure and function of anodic electrode and electrolyte-associated microbiomes. Scientific Reports. 6(1)
Ikeda-Ohtsubo W, Strassert JFH, Köhler T, Mikaelyan A, Gregor I, McHardy AC, Tringe SGreen, Hugenholtz P, Radek R, Brune A.  2016.  Candidatus Adiutrix intracellularis’, an endosymbiont of termite gut flagellates, is the first representative of a deep-branching clade of Deltaproteobacteria and a putative homoacetogen. Environmental Microbiology. 18(8):2548-2564.
Haroon MF, Thompson LR, Parks DH, Hugenholtz P, Stingl U.  2016.  A catalogue of 136 microbial draft genomes from Red Sea metagenomes. Scientific Data. 3:160050.
Yeoh YKit, Sekiguchi Y, Parks DH, Hugenholtz P.  2016.  Comparative Genomics of Candidate Phylum TM6 Suggests That Parasitism Is Widespread and Ancestral in This Lineage. Molecular Biology and Evolution. 33(4):915-927.
Yeoh YKit, Paungfoo-Lonhienne C, Dennis PG, Robinson N, Ragan MA, Schmidt S, Hugenholtz P.  2016.  The core root microbiome of sugarcanes cultivated under varying nitrogen fertilizer application. Environmental Microbiology. 18(5):1338-1351.
Paungfoo-Lonhienne C, Lonhienne TGA, Yeoh YKit, Donose BC, Webb RI, Parsons J, Liao W, Sagulenko E, Lakshmanan P, Hugenholtz P et al..  2016.  Crosstalk between sugarcane and a plant-growth promoting Burkholderia species. Scientific Reports. 6(1)
Angly FE, Pantos O, Morgan TC, Rich V, Tonin H, Bourne DG, Mercurio P, Negri AP, Tyson GW.  2016.  Diuron tolerance and potential degradation by pelagic microbiomes in the Great Barrier Reef lagoon. PeerJ. 4:e1758.

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