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2015
Tout J, Jeffries TC, Petrou K, Tyson GW, Webster NS, Garren M, Stocker R, Ralph PJ, Seymour JR.  2015.  Chemotaxis by natural populations of coral reef bacteria. The ISME Journal. 9(8):1764-1777.
Wang JTH, Daly JN, Willner DL, Patil J, Hall RA, Schembri MA, Tyson GW, Hugenholtz P.  2015.  Do you kiss your mother with that mouth? An authentic large-scale undergraduate research experience in mapping the human oral microbiome. Journal of microbiology & biology education. 16:50-60.
Skennerton CT, Barr JJ, Slater FR, Bond PL, Tyson GW.  2015.  Expanding our view of genomic diversity in C andidatus  Accumulibacter clades. Environmental Microbiology. 17(5):1574-1585.
Sekiguchi Y, Ohashi A, Parks DH, Yamauchi T, Tyson GW, Hugenholtz P.  2015.  First genomic insights into members of a candidate bacterial phylum responsible for wastewater bulking.. PeerJ. 3:e740.
Whitman WB, Woyke T, Klenk H-P, Zhou Y, Lilburn TG, Beck BJ, De Vos P, Vandamme P, Eisen JA, Garrity G et al..  2015.  Genomic Encyclopedia of Bacterial and Archaeal Type Strains, Phase III: the genomes of soil and plant-associated and newly described type strains. Standards in Genomic Sciences. 10(1)
Pantos O, Bongaerts P, Dennis PG, Tyson GW, Hoegh-Guldberg O.  2015.  Habitat-specific environmental conditions primarily control the microbiomes of the coral Seriatopora hystrix. The ISME Journal. 9(9):1916-1927.
Hu S, Zeng RJ, Haroon MF, Keller J, Lant PA, Tyson GW, Yuan Z.  2015.  A laboratory investigation of interactions between denitrifying anaerobic methane oxidation (DAMO) and anammox processes in anoxic environments.. Scientific reports. 5:8706.
Evans PN, Parks DH, Chadwick GL, Robbins SJ, Orphan VJ, Golding SD, Tyson GW.  2015.  Methane metabolism in the archaeal phylum Bathyarchaeota revealed by genome-centric metagenomics.. Science (New York, N.Y.). 350:434-8.
Rahman NAbdul, Parks DH, Willner DL, Engelbrektson AL, Goffredi SK, Warnecke F, Scheffrahn RH, Hugenholtz P.  2015.  A molecular survey of Australian and North American termite genera indicates that vertical inheritance is the primary force shaping termite gut microbiomes.. Microbiome. 3:5.
Paungfoo-Lonhienne C, Yeoh YKit, Kasinadhuni NRup Pinaki, Lonhienne TGA, Robinson N, Hugenholtz P, Ragan MA, Schmidt S.  2015.  Nitrogen fertilizer dose alters fungal communities in sugarcane soil and rhizosphere.. Scientific reports. 5:8678.
Voolstra CRobert, Miller DJohn, Ragan MA, Hoffmann A, Hoegh-Guldberg O, Bourne D, Ball E, Ying H, Foret S, Takahashi S et al..  2015.  The ReFuGe 2020 Consortium—using “omics” approaches to explore the adaptability and resilience of coral holobionts to environmental change. Frontiers in Marine Science.
Patil SA, Arends JBA, Vanwonterghem I, van Meerbergen J, Guo K, Tyson GW, Rabaey K.  2015.  Selective Enrichment Establishes a Stable Performing Community for Microbial Electrosynthesis of Acetate from CO 2. Environmental Science & Technology. 49(14):8833-8843.
Vanwonterghem I, Jensen PD, Rabaey K, Tyson GW.  2015.  Temperature and solids retention time control microbial population dynamics and volatile fatty acid production in replicated anaerobic digesters.. Scientific reports. 5:8496.
Susilawati R, Evans PN, Esterle JS, Robbins SJ, Tyson GW, Golding SD, Mares TE.  2015.  Temporal changes in microbial community composition during culture enrichment experiments with Indonesian coals. International Journal of Coal Geology. 137:66-76.
Waldor MK, Tyson GW, Borenstein E, Ochman H, Moeller A, B Finlay B, Kong HH, Gordon JI, Nelson KE, Dabbagh K et al..  2015.  Where Next for Microbiome Research? PLoS biology. 13:e1002050.
2014
Angly FE, Fields CJ, Tyson GW.  2014.  The Bio-Community Perl toolkit for microbial ecology.. Bioinformatics (Oxford, England).
De Vrieze J, Gildemyn S, Arends JBA, Vanwonterghem I, Verbeken K, Boon N, Verstraete W, Tyson GW, Hennebel T, Rabaey K.  2014.  Biomass retention on electrodes rather than electrical current enhances stability in anaerobic digestion. Water Research. 54:211-221.
Zaugg J, Gumulya Y, Gillam EMJ, Bodén M.  2014.  Computational tools for directed evolution: a comparison of prospective and retrospective strategies. Directed Evolution Library Creation: Methods and Protocols. :315–333.
Angly FE, Dennis PG, Skarshewski A, Vanwonterghem I, Hugenholtz P, Tyson GW.  2014.  CopyRighter: a rapid tool for improving the accuracy of microbial community profiles through lineage-specific gene copy number correction.. Microbiome. 2:11.
Vanwonterghem I, Jensen PD, Dennis PG, Hugenholtz P, Rabaey K, Tyson GW.  2014.  Deterministic processes guide long-term synchronised population dynamics in replicate anaerobic digesters.. The ISME journal.
Mondav R, Woodcroft B.J., Kim E-H, McCalley CK, Hodgkins SB, Crill PM, Chanton J, Hurst GB, Verberkmoes NC, Saleska SR et al..  2014.  Discovery of a novel methanogen prevalent in thawing permafrost.. Nature communications. 5:3212.
Clingenpeel S, Schwientek P, Hugenholtz P, Woyke T.  2014.  Effects of sample treatments on genome recovery via single-cell genomics. The ISME Journal. 8(12):2546-2549.
de Cárcer DAguirre, Angly FE, Alcamí A.  2014.  Evaluation of viral genome assembly and diversity estimation in deep metagenomes.. BMC genomics. 15:989.
Soo RM, Skennerton CT, Sekiguchi Y, Imelfort M, Paech SJ, Dennis PG, Steen JA, Parks DH, Tyson GW, Hugenholtz P.  2014.  An Expanded Genomic Representation of the Phylum Cyanobacteria.. Genome biology and evolution.
Skennerton CT, Barr JJ, Slater FR, Bond PL, Tyson GW.  2014.  Expanding our view of genomic diversity in Candidatus Accumulibacter clades.. Environmental microbiology.

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