Found 179 results
Filters: Author is Hugenholtz, Philip  [Clear All Filters]
2018
Chuvochina M, Rinke C, Parks DH, Rappé MS, Tyson GW, Yilmaz P, Whitman WB, Hugenholtz P.  2018.  The importance of designating type material for uncultured taxa. Systematic and Applied Microbiology.
Laloo AElohim Elo, Wei J, Wang D, Narayanasamy S, Vanwonterghem I, Waite DW, Steen J, Kaysen A, Heintz-Buschart A, Wang Q et al..  2018.  Mechanisms of persistence of the ammonia oxidising bacteria- Nitrosomonas to the biocide Free Nitrous Acid (FNA).. Environmental Science & Technology.
Roux S, Adriaenssens EM, Dutilh BE, Koonin EV, Kropinski AM, Krupovic M, Kuhn JH, Lavigne R, J Brister R, Varsani A et al..  2018.  Minimum Information about an Uncultivated Virus Genome (MIUViG). Nature Biotechnology. 37(1):29-37.
Wood DLA, Lachner N, Tan J-M, Tang S, Angel N, Laino A, Linedale R, Cao K-ALê, Morrison M, Frazer IH et al..  2018.  A Natural History of Actinic Keratosis and Cutaneous Squamous Cell Carcinoma Microbiomes. mBio. 9(5)
Rinke C, Rubino F, Messer LF, Youssef N, Parks DH, Chuvochina M, Brown M, Jeffries T, Tyson GW, Seymour JR et al..  2018.  A phylogenomic and ecological analysis of the globally abundant Marine Group II archaea (Ca. Poseidoniales ord. nov.). The ISME Journal.
Varelias A, Bunting MD, Ormerod KL, Koyama M, Olver SD, Straube J, Kuns RD, Robb RJ, Henden AS, Cooper L et al..  2018.  Recipient mucosal-associated invariant T cells control GVHD within the colon. Journal of Clinical Investigation. 128(5):1919-1936.
Parks DH, Chuvochina M, Waite DW, Rinke C, Skarshewski A, Chaumeil P-A, Hugenholtz P.  2018.  A standardized bacterial taxonomy based on genome phylogeny substantially revises the tree of life. Nature Biotechnology.
2017
Mukherjee S, Seshadri R, Varghese NJ, Eloe-Fadrosh EA, Meier-Kolthoff JP, Göker M, R Coates C, Hadjithomas M, Pavlopoulos GA, Paez-Espino D et al..  2017.  1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life. Nature Biotechnology. 35(7):676-683.
Varelias A, Ormerod KL, Bunting MD, Koyama M, Gartlan KH, Kuns RD, Lachner N, Locke KR, Lim CY, Henden AS et al..  2017.  Acute graft-versus-host disease is regulated by an IL-17-sensitive microbiome. Blood.
Ji M, Greening C, Vanwonterghem I, Carere CR, Bay SK, Steen JA, Montgomery K, Lines T, Beardall J, van Dorst J et al..  2017.  Atmospheric trace gases support primary production in Antarctic desert surface soil. Nature. 552(7685):400-403.
Pedroso MMonteiro, Selleck C, Enculescu C, Harmer JR, Mitić N, Craig WR, Helweh W, Hugenholtz P, Tyson GW, Tierney DL et al..  2017.  Characterization of a highly efficient antibiotic-degrading metallo-β-lactamase obtained from an uncultured member of a permafrost community. Metallomics. 9(8):1157-1168.
Hugenholtz P, Waite DW, Vanwonterghem I, Rinke C, Parks DH, Zhang Y, Takai K, Sievert SM, Simon J, Campbell BJ et al..  2017.  Comparative Genomic Analysis of the Class Epsilonproteobacteria and Proposed Reclassification to Epsilonbacteraeota (phyl. nov.). Frontiers in Microbiology. 8
Yeoh YKit, Dennis PG, Paungfoo-Lonhienne C, Weber L, Brackin R, Ragan MA, Schmidt S, Hugenholtz P.  2017.  Evolutionary conservation of a core root microbiome across plant phyla along a tropical soil chronosequence. Nature Communications. 8(1)
Shiffman ME, Soo RM, Dennis PG, Morrison M, Tyson GW, Hugenholtz P.  2017.  Gene and genome-centric analyses of koala and wombat fecal microbiomes point to metabolic specialization for \textitEucalyptus digestion. PeerJ. 5:e4075.
Chotirmall SH, Gellatly SL, Budden KF, Aogáin MMac, Shukla SD, Wood DLA, Hugenholtz P, Pethe K, Hansbro PM.  2017.  Microbiomes in respiratory health and disease: An Asia-Pacific perspective. Respirology. 22(2):240-250.
Lambert BS, Raina J-B, Fernandez VI, Rinke C, Siboni N, Rubino F, Hugenholtz P, Tyson GW, Seymour JR, Stocker R.  2017.  A microfluidics-based in situ chemotaxis assay to study the behaviour of aquatic microbial communities. Nature Microbiology.
Bowers RM, Kyrpides NC, Stepanauskas R, Harmon-Smith M, Doud D, Reddy TBK, Schulz F, Jarett J, Rivers AR, Eloe-Fadrosh EA et al..  2017.  Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea. Nature Biotechnology. 35(8):725-731.
Bowers RM, Kyrpides NC, Stepanauskas R, Harmon-Smith M, Doud D, Reddy TBK, Schulz F, Jarett J, Rivers AR, Eloe-Fadrosh EA et al..  2017.  Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea. Nature Biotechnology. 35(8):725-731.
Soo RM, Hemp J, Parks DH, Fischer WW, Hugenholtz P.  2017.  On the origins of oxygenic photosynthesis and aerobic respiration in Cyanobacteria. Science. 355(6332):1436-1440.
Parks DH, Rinke C, Chuvochina M, Chaumeil P-A, Woodcroft B.J., Evans PN, Hugenholtz P, Tyson GW.  2017.  Recovery of nearly 8,000 metagenome-assembled genomes substantially expands the tree of life. Nature Microbiology.

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