Found 183 results
Filters: Author is Hugenholtz, Philip  [Clear All Filters]
2013
Braff WA, Willner D, Hugenholtz P, Rabaey K, Buie CR.  2013.  Dielectrophoresis-based discrimination of bacteria at the strain level based on their surface properties.. PloS one. 8:e76751.
Haroon MF, Hu S, Shi Y, Imelfort M, Keller J, Hugenholtz P, Yuan Z, Tyson GW.  2013.  Erratum: Anaerobic oxidation of methane coupled to nitrate reduction in a novel archaeal lineage. Nature. 501(7468):578-578.
Willner D, Hugenholtz P.  2013.  From deep sequencing to viral tagging: Recent advances in viral metagenomics.. BioEssays : news and reviews in molecular, cellular and developmental biology.
Anderson I, Teshima H, Nolan M, Lapidus A, Tice H, Del Rio TGlavina, Cheng J-F, Han C, Tapia R, Goodwin LA et al..  2013.  Genome sequence of Frateuria aurantia type strain (Kondô 67T), a xanthomonade isolated from Lilium auratium Lindl.. Standards in Genomic Sciences. 9(1):83-92.
Stackebrandt E, Chertkov O, Lapidus A, Nolan M, Lucas S, Hammon N, Deshpande S, Cheng J-F, Tapia R, Goodwin LA et al..  2013.  Genome sequence of the free-living aerobic spirochete Turneriella parva type strain (HT), and emendation of the species Turneriella parva. Standards in Genomic Sciences. 8(2):228-238.
Palaniappan K, Meier-Kolthoff JP, Teshima H, Nolan M, Lapidus A, Tice H, Del Rio TGlavina, Cheng J-F, Han C, Tapia R et al..  2013.  Genome sequence of the moderately thermophilic sulfur-reducing bacterium Thermanaerovibrio velox type strain (Z-9701T) and emended description of the genus Thermanaerovibrio. Standards in Genomic Sciences. 9(1):57-70.
Huntemann M, Stackebrandt E, Held B, Nolan M, Lucas S, Hammon N, Deshpande S, Cheng J-F, Tapia R, Goodwin LA et al..  2013.  Genome sequence of the phylogenetically isolated spirochete Leptonema illini type strain (3055T). Standards in Genomic Sciences. 8(2):177-187.
Albertsen M, Hugenholtz P, Skarshewski A, Nielsen KL, Tyson GW, Nielsen PH.  2013.  Genome sequences of rare, uncultured bacteria obtained by differential coverage binning of multiple metagenomes.. Nature biotechnology. 31:533-8.
Albertsen M, Hugenholtz P, Skarshewski A, Nielsen KL, Tyson GW, Nielsen PH.  2013.  Genome sequences of rare, uncultured bacteria obtained by differential coverage binning of multiple metagenomes. Nature Biotechnology. 31(6):533-538.
Stackebrandt E, Chertkov O, Lapidus A, Nolan M, Lucas S, Han C, Cheng J-F, Tapia R, Goodwin LA, Bruce D et al..  2013.  High-quality-draft genome sequence of the yellow-pigmented flavobacterium Joostella marina type strain (En5T). Standards in Genomic Sciences. 8(1):37-46.
Rinke C, Schwientek P, Sczyrba A, Ivanova NN, Anderson IJ, Cheng J-F, Darling A, Malfatti S, Swan BK, Gies EA et al..  2013.  Insights into the phylogeny and coding potential of microbial dark matter.. Nature.
Rinke C, Schwientek P, Sczyrba A, Ivanova NN, Anderson IJ, Cheng J-F, Darling A, Malfatti S, Swan BK, Gies EA et al..  2013.  Insights into the phylogeny and coding potential of microbial dark matter. Nature. 499(7459):431-437.
Haroon MF, Skennerton CT, Steen JA, Lachner N, Hugenholtz P, Tyson GW.  2013.  In-solution fluorescence in situ hybridization and fluorescence-activated cell sorting for single cell and population genome recovery.. Methods in enzymology. 531:3-19.
J Harris K, J Caporaso G, Walker JJ, Spear JR, Gold NJ, Robertson CE, Hugenholtz P, Goodrich J, McDonald D, Knights D et al..  2013.  Phylogenetic stratigraphy in the Guerrero Negro hypersaline microbial mat. The ISME Journal. 7(1):50-60.
Willner DL, Hugenholtz P, Yerkovich ST, Tan ME, Daly JN, Lachner N, Hopkins PM, Chambers DC.  2013.  Re-Establishment of Recipient-Associated Microbiota in the Lung Allograft is Linked to Reduced Risk of Bronchiolitis Obliterans Syndrome.. American journal of respiratory and critical care medicine.
Bragg LM, Stone G, Butler MK, Hugenholtz P, Tyson GW.  2013.  Shining a Light on Dark Sequencing: Characterising Errors in Ion Torrent PGM Data. PLoS Computational Biology. 9(4):e1003031.
Bragg LM, Stone G, Butler MK, Hugenholtz P, Tyson GW.  2013.  Shining a Light on Dark Sequencing: Characterising Errors in Ion Torrent PGM Data.. PLoS computational biology. 9:e1003031.
2012
Godoy-Vitorino F, Goldfarb KC, Karaoz U, Leal S, Garcia-Amado MA, Hugenholtz P, Tringe SG, Brodie EL, Dominguez-Bello MGloria.  2012.  Comparative analyses of foregut and hindgut bacterial communities in hoatzins and cows. The ISME Journal. 6(3):531-541.
Willner D, Daly JN, Whiley D, Grimwood K, Wainwright CE, Hugenholtz P.  2012.  Comparison of DNA Extraction Methods for Microbial Community Profiling with an Application to Pediatric Bronchoalveolar Lavage Samples. PLoS ONE. 7(4):e34605.
Willner D, Daly JN, Whiley D, Grimwood K, Wainwright CE, Hugenholtz P.  2012.  Comparison of DNA extraction methods for microbial community profiling with an application to pediatric bronchoalveolar lavage samples.. PloS one. 7:e34605.
Copeland A, Gu W, Yasawong M, Lapidus A, Lucas S, Deshpande S, Pagani I, Tapia R, Cheng J-F, Goodwin LA et al..  2012.  Complete genome sequence of the aerobic, heterotroph Marinithermus hydrothermalis type strain (T1T) from a deep-sea hydrothermal vent chimney. Standards in Genomic Sciences. 6(1):21-30.
Copeland A, Zhang X, Misra M, Lapidus A, Nolan M, Lucas S, Deshpande S, Cheng J-F, Tapia R, Goodwin LA et al..  2012.  Complete genome sequence of the aquatic bacterium Runella slithyformis type strain (LSU 4T). Standards in Genomic Sciences. 6(2):145-154.
Huntemann M, Teshima H, Lapidus A, Nolan M, Lucas S, Hammon N, Deshpande S, Cheng J-F, Tapia R, Goodwin LA et al..  2012.  Complete genome sequence of the facultatively anaerobic, appendaged bacterium Muricauda ruestringensis type strain (B1T). Standards in Genomic Sciences. 6(2):185-193.
Anderson I, Chertkov O, Chen A, Saunders E, Lapidus A, Nolan M, Lucas S, Hammon N, Deshpande S, Cheng J-F et al..  2012.  Complete genome sequence of the moderately thermophilic mineral-sulfide-oxidizing firmicute Sulfobacillus acidophilus type strain (NALT). Standards in Genomic Sciences. 6(3):293-303.
Copeland A, Zeytun A, Yassawong M, Nolan M, Lucas S, Hammon N, Deshpande S, Cheng J-F, Han C, Tapia R et al..  2012.  Complete genome sequence of the orange-red pigmented, radioresistant Deinococcus proteolyticus type strain (MRPT). Standards in Genomic Sciences. 6(2):240-250.

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