TitleNext Generation Sequence Assembly with AMOS.
Publication TypeJournal Article
Year of Publication2011
AuthorsTreangen TJ, Sommer DD, Angly FE, Koren S, Pop M
JournalCurrent protocols in bioinformatics / editoral board, Andreas D. Baxevanis ... [et al.]
VolumeChapter 11
PaginationUnit11.8
Date Published2011 Mar
ISSN1934-340X
AbstractA Modular Open-Source Assembler (AMOS) was designed to offer a modular approach to genome assembly. AMOS includes a wide range of tools for assembly, including the lightweight de novo assemblers Minimus and Minimo, and Bambus 2, a robust scaffolder able to handle metagenomic and polymorphic data. This protocol describes how to configure and use AMOS for the assembly of Next Generation sequence data. Additionally, we provide three tutorial examples that include bacterial, viral, and metagenomic datasets with specific tips for improving assembly quality.Curr. Protoc. Bioinform. 33:11.8.1-11.8.18. © 2011 by John Wiley & Sons, Inc.

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