TitleApplication of metatranscriptomics to soil environments.
Publication TypeJournal Article
Year of Publication2012
AuthorsCarvalhais LC, Dennis P.G, Tyson GW, Schenk PM
JournalJournal of microbiological methods
Volume91
Pagination246-51
Date Published2012 Nov
ISSN1872-8359
AbstractThe activities of soil microbial communities are of critical importance to terrestrial ecosystem functioning. The mechanisms that determine the interactions between soil microorganisms, their environment and neighbouring organisms, however, are poorly understood. Due to advances in sequencing technologies, an increasing number of metagenomics studies are being conducted on samples from diverse environments including soils. This information has not only increased our awareness of the functional potential of soil microbial communities, but also constitutes powerful reference material for soil metatranscriptomics studies. Metatranscriptomics provides a snapshot of transcriptional profiles that correspond to discrete populations within a microbial community at the time of sampling. This information can indicate the potential activities of complex microbial communities and the mechanisms that regulate them. Here we summarise the technical challenges for metatranscriptomics applied to soil environments and discuss approaches for gaining biologically meaningful insight into these datasets.
DOI10.1016/j.mimet.2012.08.011

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