| Title | The Bio-Community Perl toolkit for microbial ecology. |
|---|---|
| Publication Type | Journal Article |
| Year of Publication | 2014 |
| Authors | Angly FE, Fields CJ, Tyson GW |
| Journal | Bioinformatics (Oxford, England) |
| Date Published | 2014 Mar 23 |
| ISSN | 1367-4811 |
| Abstract | The development of bioinformatic solutions for microbial ecology in Perl is limited by the lack of modules to represent and manipulate microbial community profiles from amplicon and meta-omics studies. Here we introduce Bio-Community, an open-source, collaborative toolkit that extends BioPerl. Bio-Community interfaces with commonly used programs using various file formats, including BIOM, and provides operations such as rarefaction and taxonomic summaries. Bio-Community will help bioinformaticians to quickly piece together custom analysis pipelines and develop novel software. |
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