Found 182 results
Filters: Author is Hugenholtz, Philip
2016
Simpson JL, Daly JN, Baines KJ, Yang IA, Upham JW, Reynolds PN, Hodge S, James AL, Hugenholtz P, Willner D et al..  2016.  Airway dysbiosis: Haemophilus influenzae and Tropheryma in poorly controlled asthma. European Respiratory Journal. 47(3):792-800.
Leong LEX, Denman SE, Hugenholtz P, McSweeney CS.  2016.  Amino Acid and Peptide Utilization Profiles of the Fluoroacetate-Degrading Bacterium Synergistetes Strain MFA1 Under Varying Conditions. Microbial Ecology. 71(2):494-504.
Haroon MF, Thompson LR, Parks DH, Hugenholtz P, Stingl U.  2016.  A catalogue of 136 microbial draft genomes from Red Sea metagenomes. Scientific Data. 3:160050.
Yeoh YKit, Sekiguchi Y, Parks DH, Hugenholtz P.  2016.  Comparative Genomics of Candidate Phylum TM6 Suggests That Parasitism Is Widespread and Ancestral in This Lineage. Molecular Biology and Evolution. 33(4):915-927.
Yeoh YKit, Paungfoo-Lonhienne C, Dennis PG, Robinson N, Ragan MA, Schmidt S, Hugenholtz P.  2016.  The core root microbiome of sugarcanes cultivated under varying nitrogen fertilizer application. Environmental Microbiology. 18(5):1338-1351.
Paungfoo-Lonhienne C, Lonhienne TGA, Yeoh YKit, Donose BC, Webb RI, Parsons J, Liao W, Sagulenko E, Lakshmanan P, Hugenholtz P et al..  2016.  Crosstalk between sugarcane and a plant-growth promoting Burkholderia species. Scientific Reports. 6(1)
Budden KF, Gellatly SL, Wood DLA, Cooper MA, Morrison M, Hugenholtz P, Hansbro PM.  2016.  Emerging pathogenic links between microbiota and the gut–lung axis. Nature Reviews Microbiology. 15(1):55-63.
Hugenholtz P, Skarshewski A, Parks DH.  2016.  Genome-Based Microbial Taxonomy Coming of Age. Cold Spring Harbor Perspectives in Biology.
Ormerod KL, Wood DLA, Lachner N, Gellatly SL, Daly JN, Parsons JD, Dal’Molin CGO, Palfreyman RW, Nielsen LK, Cooper MA et al..  2016.  Genomic characterization of the uncultured Bacteroidales family S24-7 inhabiting the guts of homeothermic animals. Microbiome. 4(1)
Singer E, Bushnell B, Coleman-Derr D, Bowman B, Bowers RM, Levy A, Gies EA, Cheng J-F, Copeland A, Klenk H-P et al..  2016.  High-resolution phylogenetic microbial community profiling. The ISME Journal. 10(8):2020-2032.
Bissett A, Fitzgerald A, Meintjes T, Mele PM, Reith F, Dennis PG, Breed MF, Brown B, Brown MV, Brugger J et al..  2016.  Introducing BASE: the Biomes of Australian Soil Environments soil microbial diversity database. GigaScience. 5(1)
Vavourakis CD, Ghai R, Rodriguez-Valera F, Sorokin DY, Tringe SG, Hugenholtz P, Muyzer G.  2016.  Metagenomic Insights into the Uncultured Diversity and Physiology of Microbes in Four Hypersaline Soda Lake Brines. Frontiers in Microbiology. 7
Vanwonterghem I, Evans PN, Parks DH, Jensen PD, Woodcroft B.J., Hugenholtz P, Tyson GW.  2016.  Methylotrophic methanogenesis discovered in the archaeal phylum Verstraetearchaeota. Nature Microbiology. 1:16170.
Schofield BJ, Skarshewski A, Lachner N, Ouwerkerk D, Klieve AV, Dart P, Hugenholtz P.  2016.  Near complete genome sequence of the animal feed probiotic, Bacillus amyloliquefaciens H57. Standards in Genomic Sciences. 11(1)
Rahman NAbdul, Parks DH, Vanwonterghem I, Morrison M, Tyson GW, Hugenholtz P.  2016.  A Phylogenomic Analysis of the Bacterial Phylum Fibrobacteres. Frontiers in Microbiology. 6
Rinke C, Low S, Woodcroft B.J., Raina J-B, Skarshewski A, Le XH, Butler MK, Stocker R, Seymour J, Tyson GW et al..  2016.  Validation of picogram- and femtogram-input DNA libraries for microscale metagenomics. PeerJ. 4:e2486.
2015
Soo RM, Woodcroft B.J., Parks DH, Tyson GW, Hugenholtz P.  2015.  Back from the dead; the curious tale of the predatory cyanobacterium Vampirovibrio chlorellavorus.. PeerJ. 3:e968.
Parks DH, Imelfort M, Skennerton CT, Hugenholtz P, Tyson GW.  2015.  CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes.. Genome research.
Wang JTH, Daly JN, Willner DL, Patil J, Hall RA, Schembri MA, Tyson GW, Hugenholtz P.  2015.  Do you kiss your mother with that mouth? An authentic large-scale undergraduate research experience in mapping the human oral microbiome. Journal of microbiology & biology education. 16:50-60.
Sekiguchi Y, Ohashi A, Parks DH, Yamauchi T, Tyson GW, Hugenholtz P.  2015.  First genomic insights into members of a candidate bacterial phylum responsible for wastewater bulking.. PeerJ. 3:e740.
Whitman WB, Woyke T, Klenk H-P, Zhou Y, Lilburn TG, Beck BJ, De Vos P, Vandamme P, Eisen JA, Garrity G et al..  2015.  Genomic Encyclopedia of Bacterial and Archaeal Type Strains, Phase III: the genomes of soil and plant-associated and newly described type strains. Standards in Genomic Sciences. 10(1)
Rahman NAbdul, Parks DH, Willner DL, Engelbrektson AL, Goffredi SK, Warnecke F, Scheffrahn RH, Hugenholtz P.  2015.  A molecular survey of Australian and North American termite genera indicates that vertical inheritance is the primary force shaping termite gut microbiomes.. Microbiome. 3:5.
Paungfoo-Lonhienne C, Yeoh YKit, Kasinadhuni NRup Pinaki, Lonhienne TGA, Robinson N, Hugenholtz P, Ragan MA, Schmidt S.  2015.  Nitrogen fertilizer dose alters fungal communities in sugarcane soil and rhizosphere.. Scientific reports. 5:8678.

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