Found 182 results
Filters: Author is Hugenholtz, Philip
2014
Mondav R, Woodcroft B.J., Kim E-H, McCalley CK, Hodgkins SB, Crill PM, Chanton J, Hurst GB, Verberkmoes NC, Saleska SR et al..  2014.  Discovery of a novel methanogen prevalent in thawing permafrost.. Nature communications. 5:3212.
Clingenpeel S, Schwientek P, Hugenholtz P, Woyke T.  2014.  Effects of sample treatments on genome recovery via single-cell genomics. The ISME Journal. 8(12):2546-2549.
Soo RM, Skennerton CT, Sekiguchi Y, Imelfort M, Paech SJ, Dennis PG, Steen JA, Parks DH, Tyson GW, Hugenholtz P.  2014.  An Expanded Genomic Representation of the Phylum Cyanobacteria.. Genome biology and evolution.
Göker M, Lu M, Fiebig A, Nolan M, Lapidus A, Tice H, Del Rio TGlavina, Cheng J-F, Han C, Tapia R et al..  2014.  Genome sequence of the mud-dwelling archaeon Methanoplanus limicola type strain (DSM 2279T), reclassification of Methanoplanus petrolearius as Methanolacinia petrolearia and emended descriptions of the genera Methanoplanus and Methanolacinia. Standards in Genomic Sciences. 9(3):1076-1088.
Göker M, Spring S, Scheuner C, Anderson I, Zeytun A, Nolan M, Lucas S, Tice H, Del Rio TGlavina, Cheng J-F et al..  2014.  Genome sequence of the Thermotoga thermarum type strain (LA3T) from an African solfataric spring. Standards in Genomic Sciences. 9(3):1105-1117.
Kyrpides NC, Hugenholtz P, Eisen JA, Woyke T, Göker M, Parker CT, Amann R, Beck BJ, Chain PSG, Chun J et al..  2014.  Genomic Encyclopedia of Bacteria and Archaea: Sequencing a Myriad of Type Strains. PLoS Biology. 12(8):e1001920.
Imelfort M, Parks DH, Woodcroft B.J., Dennis P, Hugenholtz P, Tyson GW.  2014.  GroopM: an automated tool for the recovery of population genomes from related metagenomes.. PeerJ. 2:e603.
Paungfoo-Lonhienne C, Lonhienne TGA, Yeoh YKit, Webb RI, Lakshmanan P, Chan CXin, Lim P-E, Ragan MA, Schmidt S, Hugenholtz P.  2014.  A new species of Burkholderia isolated from sugarcane roots promotes plant growth.. Microbial biotechnology. 7:142-54.
Willner D, Low S, Steen JA, George N, Nimmo GR, Schembri MA, Hugenholtz P.  2014.  Single clinical isolates from acute uncomplicated urinary tract infections are representative of dominant in situ populations.. mBio. 5
Parks DH, Tyson GW, Hugenholtz P, Beiko RG.  2014.  STAMP: statistical analysis of taxonomic and functional profiles.. Bioinformatics (Oxford, England).
Deng L, J. Ignacio-Espinoza C, Gregory AC, Poulos BT, Weitz JS, Hugenholtz P, Sullivan MB.  2014.  Viral tagging reveals discrete populations in Synechococcus viral genome sequence space. Nature. 513(7517):242-245.
Lonhienne T, Mason MG, Ragan MA, Hugenholtz P, Schmidt S, Paungfoo-Lonhienne C.  2014.  Yeast as a Biofertilizer Alters Plant Growth and Morphology. Crop Science. 54(2):785.
2013
Haroon MF, Hu S, Shi Y, Imelfort M, Keller J, Hugenholtz P, Yuan Z, Tyson GW.  2013.  Anaerobic oxidation of methane coupled to nitrate reduction in a novel archaeal lineage.. Nature.
Flowers JJ, He S, Malfatti S, Del Rio TGlavina, Tringe SG, Hugenholtz P, McMahon KD.  2013.  Comparative genomics of two ‘Candidatus Accumulibacter’ clades performing biological phosphorus removal. The ISME Journal. 7(12):2301-2314.
Stackebrandt E, Zeytun A, Lapidus A, Nolan M, Lucas S, Hammon N, Deshpande S, Cheng J-F, Tapia R, Goodwin LA et al..  2013.  Complete genome sequence of Coriobacterium glomerans type strain (PW2T) from the midgut of Pyrrhocoris apterus L. (red soldier bug). Standards in Genomic Sciences. 8(1):15-25.
Liolos K, Abt B, Scheuner C, Teshima H, Held B, Lapidus A, Nolan M, Lucas S, Deshpande S, Cheng J-F et al..  2013.  Complete genome sequence of the halophilic bacterium Spirochaeta africana type strain (Z-7692T) from the alkaline Lake Magadi in the East African Rift. Standards in Genomic Sciences. 8(2):165-176.
Mavromatis K, Stackebrandt E, Held B, Lapidus A, Nolan M, Lucas S, Hammon N, Deshpande S, Cheng J-F, Tapia R et al..  2013.  Complete genome sequence of the moderate thermophile Anaerobaculum mobile type strain (NGAT). Standards in Genomic Sciences. 8(1):47-57.
Braff WA, Willner D, Hugenholtz P, Rabaey K, Buie CR.  2013.  Dielectrophoresis-based discrimination of bacteria at the strain level based on their surface properties.. PloS one. 8:e76751.
Haroon MF, Hu S, Shi Y, Imelfort M, Keller J, Hugenholtz P, Yuan Z, Tyson GW.  2013.  Erratum: Anaerobic oxidation of methane coupled to nitrate reduction in a novel archaeal lineage. Nature. 501(7468):578-578.
Willner D, Hugenholtz P.  2013.  From deep sequencing to viral tagging: Recent advances in viral metagenomics.. BioEssays : news and reviews in molecular, cellular and developmental biology.
Anderson I, Teshima H, Nolan M, Lapidus A, Tice H, Del Rio TGlavina, Cheng J-F, Han C, Tapia R, Goodwin LA et al..  2013.  Genome sequence of Frateuria aurantia type strain (Kondô 67T), a xanthomonade isolated from Lilium auratium Lindl.. Standards in Genomic Sciences. 9(1):83-92.
Stackebrandt E, Chertkov O, Lapidus A, Nolan M, Lucas S, Hammon N, Deshpande S, Cheng J-F, Tapia R, Goodwin LA et al..  2013.  Genome sequence of the free-living aerobic spirochete Turneriella parva type strain (HT), and emendation of the species Turneriella parva. Standards in Genomic Sciences. 8(2):228-238.
Palaniappan K, Meier-Kolthoff JP, Teshima H, Nolan M, Lapidus A, Tice H, Del Rio TGlavina, Cheng J-F, Han C, Tapia R et al..  2013.  Genome sequence of the moderately thermophilic sulfur-reducing bacterium Thermanaerovibrio velox type strain (Z-9701T) and emended description of the genus Thermanaerovibrio. Standards in Genomic Sciences. 9(1):57-70.
Huntemann M, Stackebrandt E, Held B, Nolan M, Lucas S, Hammon N, Deshpande S, Cheng J-F, Tapia R, Goodwin LA et al..  2013.  Genome sequence of the phylogenetically isolated spirochete Leptonema illini type strain (3055T). Standards in Genomic Sciences. 8(2):177-187.
Albertsen M, Hugenholtz P, Skarshewski A, Nielsen KL, Tyson GW, Nielsen PH.  2013.  Genome sequences of rare, uncultured bacteria obtained by differential coverage binning of multiple metagenomes.. Nature biotechnology. 31:533-8.

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