Found 91 results
Filters: Author is Gene W Tyson
2014
Angly FE, Fields CJ, Tyson GW.  2014.  The Bio-Community Perl toolkit for microbial ecology.. Bioinformatics (Oxford, England).
De Vrieze J, Gildemyn S, Arends JBA, Vanwonterghem I, Verbeken K, Boon N, Verstraete W, Tyson GW, Hennebel T, Rabaey K.  2014.  Biomass retention on electrodes rather than electrical current enhances stability in anaerobic digestion. Water Research. 54:211-221.
Angly FE, Dennis PG, Skarshewski A, Vanwonterghem I, Hugenholtz P, Tyson GW.  2014.  CopyRighter: a rapid tool for improving the accuracy of microbial community profiles through lineage-specific gene copy number correction.. Microbiome. 2:11.
Vanwonterghem I, Jensen PD, Dennis PG, Hugenholtz P, Rabaey K, Tyson GW.  2014.  Deterministic processes guide long-term synchronised population dynamics in replicate anaerobic digesters.. The ISME journal.
Mondav R, Woodcroft B.J., Kim E-H, McCalley CK, Hodgkins SB, Crill PM, Chanton J, Hurst GB, Verberkmoes NC, Saleska SR et al..  2014.  Discovery of a novel methanogen prevalent in thawing permafrost.. Nature communications. 5:3212.
Soo RM, Skennerton CT, Sekiguchi Y, Imelfort M, Paech SJ, Dennis PG, Steen JA, Parks DH, Tyson GW, Hugenholtz P.  2014.  An Expanded Genomic Representation of the Phylum Cyanobacteria.. Genome biology and evolution.
Skennerton CT, Barr JJ, Slater FR, Bond PL, Tyson GW.  2014.  Expanding our view of genomic diversity in Candidatus Accumulibacter clades.. Environmental microbiology.
Imelfort M, Parks DH, Woodcroft B.J., Dennis P, Hugenholtz P, Tyson GW.  2014.  GroopM: an automated tool for the recovery of population genomes from related metagenomes.. PeerJ. 2:e603.
Vanwonterghem I, Jensen PD, Ho DP, Batstone DJ, Tyson GW.  2014.  Linking microbial community structure, interactions and function in anaerobic digesters using new molecular techniques.. Current opinion in biotechnology. 27C:55-64.
Bragg L, Tyson GW.  2014.  Metagenomics using next-generation sequencing.. Methods in molecular biology (Clifton, N.J.). 1096:183-201.
McCalley CK, Woodcroft B.J., Hodgkins SB, Wehr RA, Kim E-H, Mondav R, Crill PM, Chanton JP, Rich VI, Tyson GW et al..  2014.  Methane dynamics regulated by microbial community response to permafrost thaw.. Nature. 514:478-81.
Parks DH, Tyson GW, Hugenholtz P, Beiko RG.  2014.  STAMP: statistical analysis of taxonomic and functional profiles.. Bioinformatics (Oxford, England).
2013
Carvalhais LC, Dennis PG, Badri DV, Tyson GW, Vivanco JM, Schenk PM.  2013.  Activation of the Jasmonic Acid Plant Defence Pathway Alters the Composition of Rhizosphere Bacterial Communities. PLoS ONE. 8(2):e56457.
Haroon MF, Hu S, Shi Y, Imelfort M, Keller J, Hugenholtz P, Yuan Z, Tyson GW.  2013.  Anaerobic oxidation of methane coupled to nitrate reduction in a novel archaeal lineage.. Nature.
Bourne DG, Dennis PG, Uthicke S, Soo RM, Tyson GW, Webster N.  2013.  Coral reef invertebrate microbiomes correlate with the presence of photosymbionts. The ISME Journal. 7(7):1452-1458.
Skennerton CT, Imelfort M, Tyson GW.  2013.  Crass: identification and reconstruction of CRISPR from unassembled metagenomic data.. Nucleic acids research.
Dennis PG, Seymour J, Kumbun K, Tyson GW.  2013.  Diverse populations of lake water bacteria exhibit chemotaxis towards inorganic nutrients.. The ISME journal.
Pervin HM, Dennis PG, Lim HJ, Tyson GW, Batstone DJ, Bond PL.  2013.  Drivers of microbial community composition in mesophilic and thermophilic temperature-phased anaerobic digestion pre-treatment reactors. Water Research. 47(19):7098-7108.
Dennis PG, Harnisch F, Yeoh YKit, Tyson GW, Rabaey K.  2013.  Dynamics of cathode-associated microbial communities and metabolite profiles in a glycerol-fed bioelectrochemical system.. Applied and environmental microbiology.
Haroon MF, Hu S, Shi Y, Imelfort M, Keller J, Hugenholtz P, Yuan Z, Tyson GW.  2013.  Erratum: Anaerobic oxidation of methane coupled to nitrate reduction in a novel archaeal lineage. Nature. 501(7468):578-578.

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